Can I make a final decision which peaks should be present in the binary matrix and which one not?
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GelQuest allows to exclude peaks after peak detection. This can be done either manually for individual peaks or in an automatic mode.

·     To manually exclude a certain peak ("disabling a peak") from the 01 matrix (the hyperbin table) just click it with the right mouse button. This peak can be included again ("enabled") with a second right mouse click.
·     Peaks can also be automatically exclude by changing the hyperbin configuration parameters. Here, you may filter for minimum/maximum base size, peak height, peak area, peak width and peak height to width ratio.